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Folding Slow Down
Posted: Wed Jan 31, 2001 7:13 am
by DIDS
Has anyone noticed a slowdown in processing WU's? I use to process 1 unit every 2 hours. Now I am lucky to process 1 unit every 6 hours.
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Posted: Wed Jan 31, 2001 11:50 am
by Charlie
Hey DIDS,
It all depends on what you get.
Villindes seem to run slightly longer than villins,
actin bindings are the worst of all
and hairpins are the best that you can hope for.
Charlie
Posted: Wed Jan 31, 2001 11:54 am
by balakov10
how can you tell?
Posted: Wed Jan 31, 2001 1:48 pm
by ssjDoh
ahh, that helps a lot...hehe, I thought my computer was messed cause it would take me 2 hours per unit (instead of my normal 20 min or so)
Hehem I scan disked and defrag...it did help...but I guess at the same time, I got a different protein to fold
Posted: Thu Feb 01, 2001 12:01 am
by balakov10
is that what I should be looking for?
xyzfile:
" 177 betahairpin
1 CH3 -11.476904 -16.050227 44.179484 7 2
..."
keyfile:
"parameters ./opls.prm
NOVERSION
ARCHIVE
cutoff 16.0
taper 12.0
..."
Got work, writing checkpoint file
Starting run
Writing local files: project.xyz project.key.
Posted: Thu Feb 01, 2001 12:35 am
by Charlie
That's the one yes.....betahairpin is the fastest so far
Charlie
[This message has been edited by Charlie (edited 01-31-2001).]
Posted: Thu Feb 01, 2001 12:37 am
by DIDS
<font face="Verdana, Arial" size="2">Originally posted by Charlie:
Hey DIDS,
It all depends on what you get.
Villindes seem to run slightly longer than villins,
actin bindings are the worst of all
and hairpins are the best that you can hope for.
Charlie</font>
That explains it. I seem to only be getting Protein: ACTIN BINDING lately. Atleast it isn't something wrong with my PC. Thanks for the Info!
Regards,
DIDS