Folding Slow Down

[DIDS]

Has anyone noticed a slowdown in processing WU's? I use to process 1 unit every 2 hours. Now I am lucky to process 1 unit every 6 hours.



------------------

[Charlie]

Hey DIDS,
It all depends on what you get.
Villindes seem to run slightly longer than villins,
actin bindings are the worst of all
and hairpins are the best that you can hope for.

Charlie

[balakov10]

how can you tell?

[ssjDoh]

ahh, that helps a lot...hehe, I thought my computer was messed cause it would take me 2 hours per unit (instead of my normal 20 min or so)

Hehem I scan disked and defrag...it did help...but I guess at the same time, I got a different protein to fold

[balakov10]

is that what I should be looking for?


xyzfile:
" 177 betahairpin
1 CH3 -11.476904 -16.050227 44.179484 7 2
..."
keyfile:
"parameters ./opls.prm
NOVERSION
ARCHIVE

cutoff 16.0
taper 12.0

..."
Got work, writing checkpoint file
Starting run
Writing local files: project.xyz project.key.

[Charlie]

That's the one yes.....betahairpin is the fastest so far


Charlie

[This message has been edited by Charlie (edited 01-31-2001).]

[DIDS]

<font face="Verdana, Arial" size="2">Originally posted by Charlie:
Hey DIDS,
It all depends on what you get.
Villindes seem to run slightly longer than villins,
actin bindings are the worst of all
and hairpins are the best that you can hope for.

Charlie</font>

That explains it. I seem to only be getting Protein: ACTIN BINDING lately. Atleast it isn't something wrong with my PC. Thanks for the Info!


Regards,

DIDS