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Thread: Folding Slow Down

  1. #1
    DIDS
    Guest

    Post Folding Slow Down

    Has anyone noticed a slowdown in processing WU's? I use to process 1 unit every 2 hours. Now I am lucky to process 1 unit every 6 hours.



    ------------------

  2. #2
    Charlie
    Guest

    Post

    Hey DIDS,
    It all depends on what you get.
    Villindes seem to run slightly longer than villins,
    actin bindings are the worst of all
    and hairpins are the best that you can hope for.

    Charlie

  3. #3
    balakov10
    Guest

    Post

    how can you tell?

  4. #4
    ssjDoh
    Guest

    Post

    ahh, that helps a lot...hehe, I thought my computer was messed cause it would take me 2 hours per unit (instead of my normal 20 min or so)

    Hehem I scan disked and defrag...it did help...but I guess at the same time, I got a different protein to fold

  5. #5
    balakov10
    Guest

    Post

    is that what I should be looking for?


    xyzfile:
    " 177 betahairpin
    1 CH3 -11.476904 -16.050227 44.179484 7 2
    ..."
    keyfile:
    "parameters ./opls.prm
    NOVERSION
    ARCHIVE

    cutoff 16.0
    taper 12.0

    ..."
    Got work, writing checkpoint file
    Starting run
    Writing local files: project.xyz project.key.

  6. #6
    Charlie
    Guest

    Post

    That's the one yes.....betahairpin is the fastest so far


    Charlie

    [This message has been edited by Charlie (edited 01-31-2001).]

  7. #7
    DIDS
    Guest

    Thumbs up

    <font face="Verdana, Arial" size="2">Originally posted by Charlie:
    Hey DIDS,
    It all depends on what you get.
    Villindes seem to run slightly longer than villins,
    actin bindings are the worst of all
    and hairpins are the best that you can hope for.

    Charlie
    </font>

    That explains it. I seem to only be getting Protein: ACTIN BINDING lately. Atleast it isn't something wrong with my PC. Thanks for the Info!


    Regards,

    DIDS


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