You seem to suggest that it may be related to Microsoft updates. It is also possible that something on the line changed, and Windows is not as capable of dealing with the issue as well as Linux (different congestion avoidance algorithms, etc.)? Are your Cable modem signal levels good, no packet loss, normal latency?
The CPU seems a bit on the slower side for a 1Gbps transfer in the above post, how is the CPU utilization during transfers?
It may be a good idea to try a different approach to speed testing, like a direct download from a multi-source (torrent of a Linux distro, for example). That would eliminate the browser/HTML5/Java, etc. from the equation.
When you do a direct file transfer between your PCs, are you able to achieve the 1GBps? It could be a NIC driver issue in general in Windows.
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